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I cannot get a MySQL database to save the source information in the database so that I can use the sql file that holds the database information in it.

I have tried two different things thinking maybe it was a file path error.

source /home/justinsloan/SerialKeyDB.sql

and

source /home/justinsloan/MySQL/SerialKeyDB.sql

and as soon as I leave the database and come back to it, it is like nothing was ever in it.

That sounds like you may need to commit the transaction so that it is actually written to the database.